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  1. EGFR NEDD9 TGF BETA INTERACTOME AND METHODS OF USE THEREOF FOR THE IDENTIFICATION OF AGENTS HAVING EFFICACY IN THE TREATMENT OF HYPERPROLIFERATIVE DISORDERS.
    Patent. EGF Pathway Data used.
  1. SMPDB: The Small Molecule Pathway Database
    Commentary on Database.
  1. IL-4-mediated transcriptional regulation of human CYP2E1 by two independent signaling pathways
    Protein Lounge pathway databases used to identify transcription factors involved in IL-4 response.
  1. Antitumor Effect of Butanoylated Heparin with Low Anticoagulant Activity on Lung Cancer Growth in Mice and Rats
  1. Biomolecular Pathway Databases
    Mentions Protein Lounge in a table along with other sites that feature pathways.
  1. High density peptide arrays containing kinase or phosphatase substrates
    Describes plans to use kinase-phosphotase to find substrates for phosphates and phosphates for kinases to be inserted into the peptide array.
  1. Functional Analysis of the Cathepsin-Like Cysteine Protease Genes in Adult Brugia malayi Using RNA Interference
    siRNA database used to get predicted siRNA of three transcripts.
  1. Animal models of maple syrup urine disease
    Skvorak KJ. J Inherit Metab Dis 32:229–246. Pathway Builder used to summarize BCAA Metabolism in a liver cell (Fig 1) and to make a figure of the GABA-glutamate/glutamine cycle (Fig 8).
  1. Potential of a metabolic gene (accA3 ) of M.leprae as a marker for leprosy reactions.
    Used Peptide Antigen finder tool to find the best antigenic parts of a protein sequence.
  1. Functional organization of the yeast proteome by a yeast interactome map.
    Used Protein Lounge Kinase and Phosphotase Database to curate 48 kinase–substrate restricted transient interactions.
  1. Role of STAT1, NF-κB, and C/EBPβ in the macrophage transcriptional regulation of hepcidin by mycobacterial infection and IFN-γ.
    A target sequence (nucleotides 255-275) in the mouse STAT1 gene (NM_009283) was identified using the siRNA database.
  1. Comparative Analyses of Transcriptional Profiles in Mouse Organs Using a Pneumonic Plague Model after Infection with Wild-Type Yersinia pestis CO92 and Its Braun Lipoprotein Mutant.
    Protein Lounge Pathway Database.
  1. Mining large heterogeneous data sets in drug discovery
    Mentions ProteinLounge disease database as a means of getting disease level information.
  1. MicroRNA-195 suppresses tumorigenicity and regulates G1/S transition of human hepatocellular carcinoma cells.
    Characterized functions of miR-195 using Protein Lounge pathway database.
  1. TSC Research Update: Unlock the Cure
    VH Whittemore. SA Biosciences custom pathway from ProteinLounge(mTor used).
  1. TLR7: A therapeutic target for HBV and HCV chronic infections.
    RE Lanford. TLR7 ProteinLounge custom pathway from SA Biosciences used.
  1. Pathway Analysis of Cell Culture Phenotypes and Uses Thereof
    Patent. Mentions ePath3D as an exemplary pathway invention tool.
  1. Pathway Modulators and Inhibitors
    SABiosciences Pathway Central which was designed by Protein Lounge is mentioned as a pathway study resource.
  1. NFκB inhibitors Strategies from poxviruses
    SABiosciences/ProteinLounge pathway map used (Fig 1&2).
  1. Signaling pathways and cell cycle modeling control mechanisms
    ProteinLounge graphic used to demonstrate the role of signaling pathways in controlling the cell cycle.
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